Computational protocol: CgOpt1, a putative oligopeptide transporter from Colletotrichum gloeosporioides that is involved in responses to auxin and pathogenicity

Similar protocols

Protocol publication

[…] CgOPT1 homologous sequences were identified by BlastpX [] analyses at the NCBI database http://www.ncbi.nlm.nih.gov/. For details of species and retrieved sequences see Additional file and Additional file . Multiple alignments were performed by the ClustalW program []. Phylogenetic analyses were conducted with the PHYLIP package [], available online at http://mobyle.pasteur.fr. The phylogenetic tree was based on a parsimony analysis using the Protpars program and subsequently drawn with the Drawtree program.Data were analyzed by t-test at a significance level of P < 0.05, using the Microsoft Office Excel software package. […]

Pipeline specifications

Software tools Clustal W, PHYLIP, [email protected], Drawtree
Application Phylogenetics
Organisms Colletotrichum gloeosporioides, Flavobacterium sp.
Diseases Infection