Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 9
Release date: Oct 31 2013
Last update date: Jun 6 2018
Access: Public
Taxon: Oryza sativa
Dataset link Transcriptomes of isolated rice gametes characterized by deep sequencing: Evidence for distinct sex-dependent chromatin and epigenetic states before fertilization

Experimental Protocol


The gene expression profiles of the three gametic cells, egg cell (EC), sperm cell (Sp) and vegetative cell (Ve) were compared via RNA-seq using three biological replicates for each. Differential expression (DE) analysis was performed using edgeR and the resulting DE genes were assessed for Gene Ontology term enrichment.

Repositories


GEO

GSE50777

ArrayExpress

E-GEOD-50777

ENA

SRP029890

BioProject

PRJNA218883

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Contact


Cameron Johnson