Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 30
Release date: Apr 7 2008
Last update date: Mar 17 2012
Access: Public
Diseases: Chemical and Drug Induced Liver Injury
Dataset link Influence of Water Chemistry on Toxicogenomics of Chronic Lead Toxicity to the Fathead Minnow (Pimephales promelas)

Experimental Protocol


To analyze the gene expression responses to low-level Pb exposures fish were exposed +/- Pb in low ionic strength base water and fish collected at 2d, 4d, 10d, and 30d for microarray analysis. Equal amounts of RNA from all no lead controls were pooled (18 fish total for 2d & 4d exposures; 12 fish total for 10d & 30d exposures) as reference samples for hybridization with each of 3 separate biological replicate pools (6 fish total for 2d & 4d exposures; 4 fish total for 10d & 30d exposures) of RNA from age-matched, lead-exposed fish. Each pair of hybridizations was repeated with dye-swaps. Additional repeats were performed for various arrays to ensure quality of data obtained from initial hybridization.

Repositories


GEO

GSE8404

ArrayExpress

E-GEOD-8404

BioProject

PRJNA101459

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Contact


Edward Mager