Computational protocol: DEP and AFO Regulate Reproductive Habit in Rice

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Protocol publication

[…] All MADS-box proteins were retrieved by BLAST searches using the conserved M-, I-, K-domain regions (174 amino acids) of OsMADS15 protein (http://www.ncbi.nlm.nih.gov). Protein sequences were aligned using the CLUSTALX 1.83 . The phylogenetic tree was constructed using the Molecular Evolution and Genetic Analysis (MEGA) package version 3.1 . […]

Pipeline specifications

Software tools Clustal W, MEGA
Application Phylogenetics
Organisms Oryza sativa
Diseases Arthritis, Juvenile, Sexual Dysfunction, Physiological, Neurodegenerative Diseases, Genetic Diseases, Inborn