Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 22
Release date: Sep 11 2014
Last update date: Oct 24 2018
Access: Public
Dataset link A global regulatory mechanism for activating an exon network required for neurogenesis

Experimental Protocol


RNA-Seq was used to obtain mRNA profiles of various N2A and 293T cell lines from human and mouse, respectively, to investigate the roles of nSR100, Ptbp1 and U2af65 in alternative splicing regulation. PAR-iCLIP and iCLIP experiments followed by high throughput sequencing were conducted to obtain RNA binding profiles of nSR100, PTBP1 and U2af65.

Repositories


GEO

GSE57278

ArrayExpress

E-GEOD-57278

ENA

SRP041656

BioProject

PRJNA246157

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Contact


Bushra Raj