Dataset features
Specifications
Application: | Gene expression microarray analysis |
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Number of samples: | 18 |
Release date: | Sep 2 2016 |
Last update date: | Sep 4 2016 |
Access: | Public |
Diseases: | Dysentery |
Chemicals: | Amino Acids, Butyrates, Fatty Acids, Fatty Acids, Volatile, Lactic Acid |
Dataset link | Microbiota-derived short-chain fatty acids modulate expression of Campylobacter jejuni determinants required for commensalism and virulence |
Experimental Protocol
Two-condition experiment, WT C. jejuni 81-176 SmR (DRH212) and isogenic ΔCjjptaackA mutant. Biological replicates: 3 81-176 SmR and 3ΔCjjptaackA independently grown to log phase and harvested. Two technical replicates/biological replicate. One replicate per array. A type 2 gene expression experimental design was used, with fluorescently labeled genomic DNA as a reference channel in each experiment as described by Lucchini, S., et al. 2005. Infect Immun 73:88-102.
Repositories
GEO
BioProject
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Contact
Craig Parker