Dataset features

Specifications


Application: RNA-seq analysis, sRNA-seq analysis
Number of samples: 4
Release date: Oct 11 2014
Last update date: Nov 3 2014
Access: Public
Diseases: Plant Poisoning
Dataset link Deep sequencing analyses of Pine wood nematode Bursaphelenchus xylophilus microRNAs reveal distinct miRNA expression patterns during the pathological process of pine wilt disease

Experimental Protocol


For the purposes of this study, we classified the pathogenic process associated with PWD into three stages in order to best characterize the expression patterns of microRNAs during the development of this devastating disease. The following describes the first stage (F): about seven days after pine trees are infected with PWNs, the tips of the pine needles begin to turn brown. Next, the middle stage (M) ensues approximately seven days later, when half of the needles on pine trees turn brown. The last stage (L) occurs another 10 days later and pine needles are complete browning. PWNs cultured on Botrytis cinerea grown on PDA medium served as the control stage (C).

Repositories


GEO

GSE62255

ArrayExpress

E-GEOD-62255

ENA

SRP048828

BioProject

PRJNA263591

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Contact


Xiaolei Ding