Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 16
Release date: Jun 10 2014
Last update date: Nov 14 2017
Access: Public
Diseases: Coronary Artery Disease, Atherosclerosis
Dataset link Integrative DNA, RNA and protein evidence connects TREML4 to coronary artery calcification

Experimental Protocol


Eight cases and eight controls (matched for gender, age and ancestry); RNA sequencing of peripheral blood from a discovery set of eight CAC cases and eight matched controls was used to identify dysregulated genes, which were validated using the NanoString® and Affymetrix GeneChip® Human Exon ST Array platforms. The median CAC scores for cases in the screening and validation sets were 1531.5 and 668.5, respectively, while all controls had a score of zero.

Repositories


GEO

GSE58150

ArrayExpress

E-GEOD-58150

ENA

SRP042623

BioProject

PRJNA251404

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Contact


Shurjo Sen
Shurjo Kumar Sen