Dataset features

Specifications


Application: BS-seq analysis
Release date: Sep 1 2016
Last update date: Sep 1 2016
Access: Public
Diseases: Hepatitis A
Dataset link The non-CG methylation is cell-type specific and conserved between human and mouse [Third-party reanalysis]

Experimental Protocol


In this study, 41 samples were re-aligned from raw sequencing data using BS-Seeker2. The raw data available from the samples associated with the following Series: GSE11034 GSE30199 GSE30206 GSE34864 GSE37202 GSE42923 GSE46644 GSE46710 GSE49828 GSE51239 GSE52331 GSE56650 GSE61330 GSE61457 GSE63394 GSE63818 The accession numbers of the re-analyzed GEO Samples (GSMnnnnn; associated with each processed data file) are indicated in the 'complete_metadata.xls'. Please note that several raw data files are downloaded directly from SRA, DDBJ (https://trace.ddbj.nig.ac.jp), European Nucleotide Archive, and the public accession numbers for the raw data associated with each processed data file are indicated in the 'complete_metadata.xls' as well. The 'DATA PROCESSING PIPELINE' section (in the 'complete_metadata.xls') describes the re-analysis details.

Repositories


GEO

GSE77019

BioProject

PRJNA309298

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Contact


Weilong Guo

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