Dataset features

Specifications


Application: RNA-seq analysis, BS-seq analysis
Number of samples: 12
Release date: Mar 22 2016
Last update date: Oct 24 2018
Access: Public
Diseases: Crohn Disease, Hamartoma Syndrome, Multiple
Dataset link Integration of genome-wide DNA methylome and transcriptome of human intestinal fibroblasts reveals novel candidate gene signatures in Crohn’s disease-associated fibrosis

Experimental Protocol


Human intestinal fibroblasts (HIFs) were extracted and cultured from colon specimens of two groups: Crohn’s disease with associated fibrosis (n=3) and normal fibroblasts from patients with Diverticulitis (n=3). Both RNA-seq and MBD-isolated genome sequencing (MiGS) were performed on every sample.

Repositories


GEO

GSE67250

ArrayExpress

E-GEOD-67250

ENA

SRP056520

BioProject

PRJNA279340

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Contact


Angela Ting
Jeffrey M Bhasin

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