Dataset features

Specifications


Dataset type: Expression profiling by high throughput sequencing
Number of samples: 8
Release date: Jan 29 2019
Last update date: Feb 1 2019
Access: Public
Dataset link Interspecies chemical signalling in a methane-oxidizing bacterial community

Experimental Protocol


In order to determine which genes MmsR regulates in response to acyl-HSL signal, we compared the transcriptome of exponentially growing LW13 in the presence or absence of 3-OH-C10-HSL. As a control for gene changes that are not the result of signal binding to MmsR, we constructed an unmarked, in-frame deletion of mmsR (∆mmsR) and also compared the transcriptome of this strain in the presence and absence of signal. For each condition, we sequenced the transcriptomes of two biological replicates.

Repositories


GEO

GSE122293

ENA

SRP168136

BioProject

PRJNA504474

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Contact


Mitchell Pesesky