Computational protocol: Use of in vivo-induced antigen technology (IVIAT) for the identification of Streptococcus suis serotype 2 in vivo-induced bacterial protein antigens

Similar protocols

Protocol publication

[…] Analysis of sequence homologies, protein families, and conserved domains was performed using NCBI BLAST http://blast.ncbi.nlm.nih.gov, information from the Sanger Genome Centre http://www.sanger.ac.uk/Projects/S_suis, and PFAM http://pfam.sanger.ac.uk. The putative functions of the newly discovered proteins were assigned using the CBS Prediction Servers http://www.cbs.dtu.dk/services/ProtFun. The cellular localizations of these proteins were predicted using PSORTb v2.0 http://www.psort.org/psortb/. […]

Pipeline specifications

Software tools BLASTN, ProtFun, PSORTb
Databases Pfam
Application Protein sequence analysis
Organisms Streptococcus suis, Sus scrofa, Homo sapiens