Computational protocol: Use of in vivo-induced antigen technology (IVIAT) for the identification of Streptococcus suis serotype 2 in vivo-induced bacterial protein antigens

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Protocol publication

[…] Analysis of sequence homologies, protein families, and conserved domains was performed using NCBI BLAST, information from the Sanger Genome Centre, and PFAM The putative functions of the newly discovered proteins were assigned using the CBS Prediction Servers The cellular localizations of these proteins were predicted using PSORTb v2.0 […]

Pipeline specifications

Software tools BLASTN, ProtFun, PSORTb
Databases Pfam
Application Protein sequence analysis
Organisms Streptococcus suis, Sus scrofa, Homo sapiens