Dataset features

Specifications


Application: SNP array data analysis
Number of samples: 12
Release date: Apr 1 2017
Last update date: Apr 2 2017
Access: Public
Diseases: Neoplasms
Dataset link Comparative genome hybridization between grapevine white-berried somatic variants and ancestral black-berried cultivars

Experimental Protocol


Young grapevine leaves from each variant line were used for gDNA extraction. Fragmented DNA was amplified, labelled and hybridized to GrapeGen Affymetrix microarrays. Three pairs of white- and black-berried variants were compared with two biological replicates per variant.

Repositories


GEO

GSE80801

BioProject

PRJNA319999

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Contact


Pablo Carbonell-Bejerano