Computational protocol: Ultra high performance liquid chromatography–high resolution mass spectrometry plasma lipidomics can distinguish between canine breeds despite uncontrolled environmental variability and non-standardized diets

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Protocol publication

[…] All data were acquired in profile mode, and converted to centroid mzXML using msconvert (ProteoWizard). All processing was performed using XCMS (Smith et al. ) (version 1.3.8) and in R (version 3.0.2). XCMS was used to process raw LC–MS data into a matrix of ~2500 features with corresponding raw intensity values. […]

Pipeline specifications

Software tools ProteoWizard, XCMS
Application MS-based untargeted proteomics
Organisms Canis lupus familiaris