Dataset features

Specifications


Application: ChIP-seq analysis
Number of samples: 41
Release date: Jan 21 2014
Last update date: Jun 21 2017
Access: Public
Chemicals: Androgens, Testosterone
Dataset link Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs. [ChIP-Seq]

Experimental Protocol


Examination of AR binding sites in murine androgen-responsive tissues prostate, epididymis and kidney using ChIP-seq. Further analysis of AR cistromes led to identification of tissue-specific collaborating factors and these collaborating factors are validated by ChIP-seq from the same tissues. Two parallel IgG samples were sequenced, merged together and used as a control data set. Parallel ChIP-seq samples were sequenced and merged for each replicate wherever required to contain approximately the same amount of reads across all tissues and conditions. All ChIP-seq experiments are performed in biological duplicates except for the castrated conditions.

Repositories


GEO

GSE47192

ArrayExpress

E-GEOD-47192

ENA

SRP023135

BioProject

PRJNA205243

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Contact


Olli Jänne
Olli A. Jänne
Olli Jänne