Computational protocol: Genotype-environment interaction on human cognitive function conditioned on the status of breastfeeding and maternal smoking around birth

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Protocol publication

[…] We compared genome-wide significant SNPs based on different environmental groups between which there was significant G × E. We used plink software to obtain GWAS p-values that were plotted using qqman software. [...] The models and methods used in this study have been fully implemented in publicly available software, MTG2. The source code, executive binary file, manual and examples are readily available to use, and can be downloaded from […]

Pipeline specifications

Software tools PLINK, qqman, MTG
Application GWAS