Dataset features

Specifications


Application: ChIP-seq analysis
Number of samples: 18
Release date: Dec 16 2013
Last update date: Nov 14 2017
Access: Public
Diseases: Lymphoma, Lymphoma, Non-Hodgkin, Neoplasms, Lymphoma, Large B-Cell, Diffuse
Dataset link Whole genome mapping of STAT3 binding sites in the two major subtypes of diffuse large B cell lymphoma

Experimental Protocol


Identification and comparison of STAT3 transcription factor binding sites in 8 cell lines that represent the 2 subtypes of DLBCL. 4 cell lines are subtyped as ABC and 4 are subtyped as GCB. 2-9 replicates and 1 input control are present for each cell line. (Cell line OCI-Ly19 was not included in the final analysis because RNA-Seq showed that its gene expression clustered in between the subtypes, probably due to its EBV+ status. However, its peak calls were used in intermediate steps of the analysis pipeline. Its sequencing runs have been included for completeness.)

Repositories


GEO

GSE50723

ArrayExpress

E-GEOD-50723

ENA

SRP029740

BioProject

PRJNA218584

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Contact


Jennifer Hardee
Jennifer Marion Hardee

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