Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 60
Release date: Oct 19 2018
Last update date: Nov 21 2018
Access: Public
Genes: CTCF, Edg2, ESRRB
Taxon: Homo sapiens, Mus musculus
Dataset link Promoter-enhancer communication occurs primarily within Gene Unit Sub-TADs (GUSTs)

Experimental Protocol


Systematic analysis on how enhancer inactivation by Esrrb knockdown affects gene expression in a GUST. All treatments contain 2 biological replicates except for Smc1 ChIP-seq and Nascent RNA-seq. Please note that the processed data generated from merged replicates are available as Series supplementary files.

Repositories


GEO

GSE115340

ENA

SRP149774

BioProject

PRJNA474608

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Contact


Siavash Kurdistani