Dataset features

Specifications


Application: Hi-C analysis
Number of samples: 3
Release date: Nov 19 2018
Last update date: Nov 29 2018
Access: Public
Genes: CTCF
Taxon: Mus musculus
Dataset link Serial Inversions Induce Tissue-specific Architectural Stripes, Gene Misexpression and Congenital Malformations [Hi-C]

Experimental Protocol


We used Hi-C to identify assymetric structures (architectural stripes) genome-wide in vivo in forelimb and hindlimb tissue (Embryonic stage E11.5). Limb buds of ten embryos were pooled and, subsequently, three independent Hi-C libraries were generated and sequenced. We also used the Hi-C data to correlate the occurrence of architectural stripes with distinct chromatin states (determined with EpiCSeg, Mammana and Chung, 2015).

Repositories


GEO

GSE116791

ENA

SRP152835

BioProject

PRJNA480258

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Contact


Andreas Magg