Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 4
Release date: Sep 15 2014
Last update date: Oct 10 2018
Access: Public
Computational protocol: TopHat, edgeR, Cufflinks, PhyloCSF, IPA
Dataset link RNA-seq analysis of diabetes induced changes in macrophage transcriptome

Experimental Protocol


Bone marrow macrophages were isolated from 12 weeks old type 2 diabetic male db/db mice and control littermates db/+ mice. These were differentiated in culture for 7-8 days in the presence of 10 ng/ml of MCSF-1 (BMMC) or 20 ng/ml of GM-CSF (BMGM). Then RNA was extracted and used for RNA-seq.

Repositories


GEO

GSE54154

ArrayExpress

E-GEOD-54154

ENA

SRP035473

BioProject

PRJNA235308

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Contact


Nancy Chen

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