Dataset features

Specifications


Application: RNA-seq analysis, sRNA-seq analysis
Number of samples: 3
Release date: Apr 30 2011
Last update date: Jun 11 2013
Access: Public
Taxon: Capsicum annuum, Zea mays
Dataset link High-throughput sequencing of small RNAs in Capsicum annuum

Experimental Protocol


Small RNA libraries were derived from leaves, flowers and fruit of Capsicum annuum. Total RNA was isolated using the TriReagent (Molecular Research Center) for leaves and flowers and the Plant RNA Purification Reagent (Invitrogen) for fruit, and submitted to Illumina (Hayward, CA, http://www.illumina.com) for small RNA library construction using approaches described in (Lu et al., 2007) with minor modifications. The small RNA libraries were sequenced with the Sequencing-By-Synthesis (SBS) technology by Illumina. PERL scripts were designed to remove the adapter sequences and determine the abundance of each distinct small RNA. We thank Barbara Baker for providing the plant material, as well as Kan Nobuta and Gayathri Mahalingam for assistance with the computational methods.

Repositories


GEO

GSE28751

ArrayExpress

E-GEOD-28751

BioProject

PRJNA143103

Download


Contact


Emanuele De Paoli