Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 39
Release date: Jun 11 2011
Last update date: Jul 24 2015
Access: Public
Diseases: Hepatitis C, Carcinoma, Hepatocellular, Infection
Dataset link Gene expression of a variety of Huh-7 derived hepatoma cells and their susceptibility to infection by JHF1 HCV in the HCV cell culture system.

Experimental Protocol


39 samples are used. In every case there are 3 biological replicates, i.e., there are 13 unique conditions (39/3=13). These samples are subdivided between two studies: (1) A comparison of HCV infection resistant cells R1.09, R1.10 and R2 against HCV susceptible Huh-7.5.1. (2) A comparison of JFH1 HCV infected Huh-7, Huh-7.5.1 and Huh-7.5.1c2 cells versus their uninfected counterparts. In each case there are two uninfected counterparts, cells that were harvested after being in culture for 20 hours and cells that were harvested at the same time point as the infected cells, that is, at the peak time of infection. Peak times for infection vary between cells, depending on their susceptibility to infection: 168 hours for Huh-7, 120 hours for Huh-7.5.1 and 96 hours for Huh-7.5.1c2.

Repositories


GEO

GSE29889

ArrayExpress

E-GEOD-29889

BioProject

PRJNA140745

Download


Contact


David Robertson

Dataset Statistics

info

Citations per year

Dataset publication