Dataset features

Specifications


Application: DNA methylation array analysis
Number of samples: 80
Release date: Jan 4 2012
Last update date: Jan 2 2015
Access: Public
Diseases: Stomach Diseases, Stomach Neoplasms, Epstein-Barr Virus Infections
Dataset link Aberrant DNA methylation epigenotype expanding to non-polycomb target genes, induced by Epstein-Barr virus infection in human gastric cancer [Illumina Methylation]

Experimental Protocol


51 clinical gastric cancer samples including 11 EBV(+) gastric cancer cases, 2 normal gastric mucosa samples and 2 peripheral blood cells were analyzed by Infinium to epigenotype gastric cancer (55 samples). In addition, 3 gastric cancer cell lines, 1 gastric cancer xenograft, and 5 methylation control samples were analyzed (9 samples). Moreover, two gastric cancer cell lines MKN7 and AGS were infected with recombinant EBV. 3 EBV(+) clones and 1 mock clone of MKN7, and 3 EBV(+) clones and 1 mock clone of AGS were analyzed (8 samples).

Repositories


GEO

GSE31788

BioProject

PRJNA155059

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Contact


Atsushi Kaneda