Computational protocol: Coupling CDH17 and CLDN18 markers for comprehensive membrane-targeted detection of human gastric cancer

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Protocol publication

[…] Unsupervised two-way hierarchical clustering analysis was performed using oligonucleotide array data for gastric cancers and IHC scores of primary lesions and nodal metastases based on the City Block distance and Correlation distance with an average linkage clustering algorithm for the sample and antibody, respectively, using Cluster 3.0 software (http://bonsai.hgc.jp/~mdehoon/software/cluster/). A heat map was drawn using Java TreeView software (http://jtreeview.sourceforge.net/). For the oligonucleotide array data, Genechip scores were represented log base 150. […]

Pipeline specifications

Software tools TreeView, JTreeView
Application Phylogenetics
Organisms Homo sapiens
Diseases Neoplasms, Stomach Neoplasms