Dataset features
Specifications
Application: | RNA-seq analysis |
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Number of samples: | 6 |
Release date: | Dec 31 2016 |
Last update date: | Nov 28 2018 |
Access: | Public |
Diseases: | Rhabdomyosarcoma, Muscular Dystrophy, Facioscapulohumeral |
Computational protocol: | Bowtie2, TopHat, DESeq2, IGV, GENCODE, GEO |
Dataset link | DUX4-induced dsRNA and MYC mRNA Stabilization Activate Apoptotic Pathways in Human Cell Models of Facioscapulohumeral Dystrophy |
Experimental Protocol
RNA-seq of human rhabdomyosarcoma cells with an inducible DUX4 transgene (RD-DUX4i) cells was performed on RNA samples collected from 3 separate experimental replicates induced from 16-18 hours with doxycycline, as indicated and compared to the respective uninduced condition.
Repositories
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Contact
Stephen Tapscott
Dataset Statistics
info
Citations per year
Dataset publication
2017
PLoS Genet
PMCID: 5362247
PMID: 28273136
DOI: 10.1371/journal.pgen.1006658
call_split See protocol