Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 6
Release date: Dec 31 2016
Last update date: Nov 28 2018
Access: Public
Diseases: Rhabdomyosarcoma, Muscular Dystrophy, Facioscapulohumeral
Computational protocol: Bowtie2, TopHat, DESeq2, IGV, GENCODE, GEO
Dataset link DUX4-induced dsRNA and MYC mRNA Stabilization Activate Apoptotic Pathways in Human Cell Models of Facioscapulohumeral Dystrophy

Experimental Protocol


RNA-seq of human rhabdomyosarcoma cells with an inducible DUX4 transgene (RD-DUX4i) cells was performed on RNA samples collected from 3 separate experimental replicates induced from 16-18 hours with doxycycline, as indicated and compared to the respective uninduced condition.

Repositories


GEO

GSE87495

ENA

SRP090635

BioProject

PRJNA344913

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Contact


Stephen Tapscott

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