Dataset features

Specifications


Application: ChIP-seq analysis
Number of samples: 39
Release date: Apr 14 2012
Last update date: Jul 20 2018
Access: Public
Dataset link Dynamic Transformations of Genome-wide Epigenetic Marking and Transcriptional Control Establish T Cell Identity [ChIP-Seq]

Experimental Protocol


Genome-wide expression profiles, global distributions of three different histone modifications, and global occupancies of two transcription factors were examined in five developmentally related immature T populations. High throughput sequencing generated on average 9-30 million of mappable reads (single-read) for each ChIP-seq sample, and 10-15 million (single-read) for RNA-seq. Independent biological replicates were analyzed for individual populations. Terminology: while FLDN1_H3Ac_sample1.1 and FLDN1_H3Ac_sample1.2 are two lanes from the same sample, FLDN1_H3Ac_sample1.X and FLDN1_H3Ac_sample2 are from independent biological replicates. The sequence data of the input DNA from the same cell type was used as ChIP-seq background control.

Repositories


GEO

GSE31233

ArrayExpress

E-GEOD-31233

ENA

SRP007822

BioProject

PRJNA154107

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Contact


Jingli Zhang
Jingli A Zhang