Dataset features

Specifications


Application: ChIP-seq analysis, DNase-seq analysis
Number of samples: 21
Release date: Oct 1 2015
Last update date: Oct 18 2018
Access: Public
Diseases: Leukemia, Precursor Cell Lymphoblastic Leukemia-Lymphoma
Dataset link Genome-wide nucleosome dynamics in glucocorticoid-treated acute lymphoblastic leukemia cell line, RS4;11

Experimental Protocol


We performed ChIP-Seq for histone modifications (H3K4me1, H3K4me2, H3K4me3, H3K27Ac), ChIP-Seq for transcription factors (GR and PU.1), and DNase-Seq from RS4;11 cells for two conditions: 1) no stimulation (steroid starved for 2 days), and 2) 10 nM dexamethasone for 1 hour.

Repositories


GEO

GSE71616

ENA

SRP061889

BioProject

PRJNA291622

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Contact


Jennifer Wu

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