Computational protocol: Interleukin 35 Polymorphisms Are Associated with Decreased Risk of Premature Coronary Artery Disease, Metabolic Parameters, and IL-35 Levels: The Genetics of Atherosclerotic Disease (GEA) Study

Similar protocols

Protocol publication

[…] In order to predict the potential effect of the IL-12A and EBI3 polymorphisms, we used the following bioinformatics tools: FastSNP [], SNP Function Prediction (http://snpinfo.niehs.nih.gov/snpinfo/snpfunc.html), Human-transcriptome Database for Alternative Splicing (http://www.h-invitational.jp/h-dbas/), Splice Port: An Interactive Splice Site Analysis Tool (http://spliceport.cbcb.umd.edu/SplicingAnalyser.html), ESE finder (http://rulai.cshl.edu/cgi-bin/tools/ESE3/esefinder.cgi), HSF (http://www.umd.be/HSF/), and SNPs3D (http://www.snps3d.org/). […]

Pipeline specifications

Software tools FastSNP, SNPinfo, SplicePort, ESEfinder, SNPs3D
Databases H-DBAS
Applications WGS analysis, GWAS
Organisms Homo sapiens
Diseases Coronary Artery Disease, Atherosclerosis