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A CLAssification of Mobile genetic Elements ACLAME

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Collects and classifies mobile genetic elements (MGEs) including phases and plasmids from various sources. ACLAME provides a platform for analyzing MGE diversity from a global scale down to specific groups of MGEs and tools for the detection of new MGEs integrated in bacterial genomes. The BLAST search interface allows for a simple querying of the ACLAME sequences, returning information such as for each hit sequence, the functional annotation, the MGE, host(s) and protein families it belongs to.

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ACLAME classification

ACLAME specifications

Restrictions to use:
None
Data access:
File download, Browse
Maintained:
Yes
Database management system:
PostgreSQL
Version:
0.4

ACLAME support

Maintainer

  • Raphaël Leplae <>

Credits

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Publications

Institution(s)

Bioinformatique des Génomes et des Réseaux, Université Libre de Bruxelles, Boulevard du Triomphe, Bruxelles, Belgium

Funding source(s)

Supported by European Space Agency (ESA-PRODEX) and the Belgian Science Policy (Belspo) through the MISSEX project (PRODEX agreements No. C90254), the Fonds de la Recherche Scientifique Medicale (FRSM) and the Belgian Program on Interuniversity Attraction Poles, initiated by the Belgian Federal Science Policy Office, project P6/25 (BioMaGNet), the BioSapiens Network of excellence funded under the sixth Framework program of the European Communities (LSHG-CT-2003-503265).

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