Computational protocol: Exploring the relationship between polymorphic (TG/CA)n repeats in intron 1 regions and gene expression

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Protocol publication

[…] We used the Database for Annotation, Visualization and Integrated Discovery (DAVID)[,] ( to identify enriched GO [] ( or Protein ANalysis THrough Evolutionary Relationships (PANTHER)[] ( biological processes, as well as known pathways such as those maintained in the KEGG [] (, Biocarta ( and PANTHER [] databases among the genes containing long I1 (TG/CA)n repeats. Biological processes or pathways over-represented relative to the whole human genome (version hg16) were identified using Fisher's exact test (five hits or more, FDR < 0.05 after BH correction []). […]

Pipeline specifications

Software tools DAVID, PANTHER
Application Protein sequence analysis
Diseases Neoplasms
Chemicals Calcium