Computational protocol: Distinct Roles of Met and Interacting Proteins on the Expressions of takeout Family Genes in Brown Planthopper

Similar protocols

Protocol publication

[…] A Phylogenetic tree, including 17 brown planthopper Takeout proteins and 65 homologs of other species, was constructed, and the sequences were downloaded from the GenBank database (http://www.ncbi.nlm.nih.gov/genbank/). The phylogenetic tree was constructed by MEGA 6.0 software using the Neighbor-Joining method and a bootstrap value of 1000. The predicted amino acid sequences of 17 N. lugens Takeout proteins were aligned into WebLogo (http://weblogo.berkeley.edu/logo.cgi) and were compared in pairs using the default settings. […]

Pipeline specifications

Software tools MEGA, WebLogo
Applications Phylogenetics, Genome data visualization
Organisms Locusta migratoria, Drosophila melanogaster, Nilaparvata lugens
Diseases Byssinosis, Dwarfism, Pituitary