Computational protocol: Utilization of Molecular, Phenotypic, and Geographical Diversity to Develop Compact Composite Core Collection in the Oilseed Crop, Safflower (Carthamus tinctorius L.) through Maximization Strategy

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Protocol publication

[…] MSTRAT (Gouesnard et al., ) and POWERCORE (Kim et al., ) were used for development of independent core collections using phenotypic data of seasons 2011–12, 2012–13 and genotypic data reported by Kumar et al. (). In MSTRAT, 20 replicates and 100 iterations were tested at a fixed sample size of 10%. The core collection with highest Shannon's diversity index was selected. POWERCORE was used as described in the user's manual (Kim et al., ). […]

Pipeline specifications

Software tools MSTRAT, PowerCore
Application WGS analysis