Dataset features

Specifications


Application: SNP array data analysis
Number of samples: 16
Release date: Apr 1 2008
Last update date: Mar 17 2012
Access: Public
Genes: NCK1
Taxon: Escherichia coli
Dataset link Genomic Comparison of the O-antigen Biosynthesis Gene Clusters of E. coli O55 Strains Belonging to Three Lineages.

Experimental Protocol


Total 8 test samples were analyzed. Genomic DNA from each test strain and a reference strain (O157 Sakai) were labeled with Cy3 and Cy5, respectively, and were cohybridized on a single array. Labeling and hybridization were performed twice independently.

Repositories


GEO

GSE8889

ArrayExpress

E-GEOD-8889

BioProject

PRJNA102271

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Contact


Atsushi Iguchi