Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 2
Release date: Oct 21 2015
Last update date: Feb 26 2018
Access: Public
Diseases: Mycobacterium Infections, Nontuberculous, Tuberculosis, Macrophage Activation Syndrome
Dataset link Genetic and Acquired Lysosomal Disorders Drive Susceptibility to Tuberculosis by Compromising Macrophage Migration

Experimental Protocol


A forward genetic screen for zebrafish larvae that are hypersusceptible to Mycobacterium marinum infection identified a mutation in the transcription factor snapc1b at 13: 37996163 (T->C). Individuals of wild type (T/T) and mutant (C/C) were genotyped and pooled respectively for RNA isolation and transcriptome analysis.

Repositories


GEO

GSE74196

ENA

SRP065032

BioProject

PRJNA299303

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Contact


Russell Berg