Produces high quality microbial genome assemblies on a laptop computer without any parameter tuning. A5-miseq does this by automating the process of adapter trimming, quality filtering, error correction, contig and scaffold generation, and detection of misassemblies. Unlike the original A5 pipeline, A5-miseq can use long reads from the Illumina MiSeq, use read pairing information during contig generation, and includes several improvements to read trimming.
- Software type:
- Package
- Interface:
- Command line interface
- Restrictions to use:
- None
- Biological technology:
- Illumina
- Operating system:
- Unix/Linux, Mac OS
- License:
- GNU General Public License version 2.0
- Computer skills:
- Advanced
- Stability:
- Stable
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user-friendly, rapid and very useful!
user-friendly, rapid and very useful!
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