Computational protocol: IMP1 regulates UCA1-mediated cell invasion through facilitating UCA1 decay and decreasing the sponge effect of UCA1 for miR-122-5p

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Protocol publication

[…] Potential microRNA binding sites of UCA1 were predicted by algorithms obtained from the Segal Laboratory (http://132.77.150.113/pubs/mir07/mir07_prediction.html), by RegRNA (http://regrna.mbc.nctu.edu.tw/html/prediction.html) and by online microRNA software (http://www.microRNA.org). Putative miR-122-5p and miR-185-5p target genes were predicted using a miRNA target prediction algorithm Target Scan (http://www.targetscan.org/). […]

Pipeline specifications

Software tools RegRNA, TargetScan
Databases microRNA.org
Application Transcription analysis