Dataset features

Specifications


Application: ChIP-seq analysis, RNA-seq analysis
Number of samples: 15
Release date: Jun 20 2013
Last update date: Oct 10 2018
Access: Public
Diseases: Prader-Willi Syndrome, Parasomnias
Computational protocol: TopHat, Cufflinks, CummeRbund
Dataset link A Prader-Willi locus lncRNA cloud modulates diurnal genes and energy expenditure.

Experimental Protocol


Examination of lncRNA binding sites by ChIRP-seq using an oligo-based purification method from WT and Snord116del (+/-) mouse brain with specific and nonspecific control oligos. Transcript abundance levels by RNA-seq analysis of 3 adult WT and 2 adult Snord116del (+/-) mouse brain cortices at Zt+6 and 2 adult WT and 2 adult Snord116del (+/-) mouse brain cortices at Zt+16.

Repositories


GEO

GSE43575

ArrayExpress

E-GEOD-43575

ENA

SRP018013

BioProject

PRJNA186743

Download


Contact


Weston Powell

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