Computational protocol: The Mechanism of Regulated Release of Lasso/Teneurin-2

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Protocol publication

[…] Samples for mass spectrometry (MS) were prepared by affinity chromatography, as described above. Lasso-14 from culture medium or Lasso/teneurin-2 from rat brain detergent extract was further separated in a preparative 4% SDS-polyacrylamide gel, which was stained using MS-compatible silver stain (Invitrogen). Protein bands excised from the gel were lyophilized, digested with trypsin (Promega) and analyzed by MALDI-TOF/TOF-MS as previously described (Silva et al., ). The data were compared to the Swiss-Prot database (2015). To predict proteolysis sites, Protease specificity prediction server (PROSPER; Song et al., ) and ProP 1.0 Server (Duckert et al., ) on-line tools were used. […]

Pipeline specifications

Software tools PROSPER, ProP
Databases UniProt
Application Protein sequence analysis
Diseases Mycobacterium avium-intracellulare Infection
Chemicals Calcium