Computational protocol: Epigenetic regulation of CDH1 exon 8 alternative splicing in gastric cancer

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Protocol publication

[…] NNSPLICE (http://www.fruitfly.org/seq_tools/splice.html) were used to predict splice acceptors and donors around CDH1 exon 8. We used the ESEfinder program (http://rulai.cshl.edu/tools/ESE) to identify exonic splicing enhancers (ESEs) []. […]

Pipeline specifications

Software tools NNSplice, ESEfinder
Application WGS analysis
Organisms Homo sapiens
Diseases Neoplasms, Stomach Neoplasms