Dataset features

Specifications


Application: Gene expression microarray analysis, miRNA array analysis
Number of samples: 24
Release date: Aug 2 2012
Last update date: Nov 1 2012
Access: Public
Genes: MIR451A
Dataset link MicroRNA expression profiling after short-term exposure to TCDD in zebrafish embryos [agilent and exiqon array data]

Experimental Protocol


MicroRNA profiling was performed (N=3 biological replicates per group) using custom designed Agilent miRNA microarrays (8x15K) and exiqon miRCURY LNA microarrays. Custom-made Agilent oligonucleotide miRNA microarrays were designed based on zebrafish mature miRNA sequences from miRbase v.16. Each individual array contained a total of 548 unique probes representing 259 mature miRNAs from zebrafish (245), Fugu rubripes (11) and Tetraodon nigriviridis (3). Exiqon miRNA probes were based on zebrafish miRNA sequences from miRbase v. 12.

Repositories


GEO

GSE38839

ArrayExpress

E-GEOD-38839

BioProject

PRJNA171750

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Contact


Neelakanteswar Aluru