AAF specifications


Unique identifier OMICS_19425
Name AAF
Alternative name Alignment and Assembly Free
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Python, R
Computer skills Advanced
Stability Stable
Requirements g++/gcc compilers, Biopython, ape
Source code URL http://humpopgenfudan.cn/resources/softwares/CO-phylog.tar.gz
Maintained Yes



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  • person_outline Huan Fan <>

Publication for Alignment and Assembly Free

AAF institution(s)
Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, China; University of Chinese Academy of Sciences, Beijing, China; Department of Zoology, University of Wisconsin-Madison, Madison, WI, USA; Institut des Sciences de la Forêt Tempérée, Université du Québec en Outaouais, Ripon, QC, Canada; Department of Biological Sciences, Texas Tech University, Lubbock, TX, USA
AAF funding source(s)
Supported by the Science Foundation of the Chinese Academy of Sciences 135 program XTBG-T01, HPC Center, Kunming Institute of Botany, CAS, China, the UW-Madison Graduate School, the Bascom-Plaenert fund, the US-NSF (DEB-0816613) Yunnan Provincial Government High Level Talent Introduction grant (09SK051B01) and Young International Scientists Fellowship of Chinese Academy of Sciences (grant number 151C53WJQNKXJ20110008).

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