Computational protocol: Molecular basis for catalysis and substrate-mediated cellular stabilization of human tryptophan 2,3-dioxygenase

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Protocol publication

[…] X-ray diffraction data were collected at the X4A and X4C beamlines of National Synchrotron Light Source (NSLS). The diffraction images were processed with the program HKL, and the data processing statistics are summarized in .The structure of hTDO was determined by the molecular replacement method, as implemented in the program MOLREP, using the structure of XcTDO tetramer (PDB entry 2NW8) as the search model. The atomic models were built with the program XtalView, and the structure refinement was carried out with CNS and PHENIX. The refinement statistics are summarized in . Coordinates and structure factors have been deposited in the Protein Data Bank with accession codes 5TI9 and 5TIA. […]

Pipeline specifications

Software tools Molrep, CNS, PHENIX
Applications Small-angle scattering, Protein structure analysis
Organisms Homo sapiens
Chemicals Superoxides, Tryptophan