Protocols

aaRNA specifications

Information


Unique identifier OMICS_05497
Name aaRNA
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for aaRNA

aaRNA citations

 (2)
library_books

RBscoreandNBench: a high level web server for nucleic acid binding residues prediction with a large scale benchmarking database

2016
Nucleic Acids Res
PMCID: 4987871
PMID: 27084939
DOI: 10.1093/nar/gkw251

[…] ediction is good but can hardly explain some ‘orphan’ binding sites that without any other binding site neighbor around. It can neither show the hierarchical binding energy funnel on protein surface. aaRNA uses a hierarchical color scheme of ‘blue_white_red’, but a cartoon model of protein structure excludes all side-chain atoms which are most important to protein–nucleic acid binding. A rainbow c […]

call_split

A Large Scale Assessment of Nucleic Acids Binding Site Prediction Programs

2015
PLoS Comput Biol
PMCID: 4683125
PMID: 26681179
DOI: 10.1371/journal.pcbi.1004639
call_split See protocol

[…] Li lab and Xiaoyong Pan provided RNAProSite and xypan prediction results respectively, with default parameter. aaRNA was used by inputting the structure file with default parameters. RNABindR and RNABindRPlus were predicted with default parameters, while removing 95% sequence identity in RNABindRPlus. KYG was […]

aaRNA institution(s)
Laboratory of Systems Immunology, WPI Immunology Frontier Research Center, Osaka University, Osaka, Japan

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