Computational protocol: Genetic variants in the acylphosphatase 2 gene and the risk of breast cancer in a Han Chinese population

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Protocol publication

[…] Statistical analyses were performed using SPSS version 17.0 for Windows (SPSS, Chicago, IL, USA). Population characteristics were compared using independent t-tests (Levene’s test to assess the equality of variances) for continuous variables and Chi-square tests for categorical variables. The PLINK software package (version 1.07) was used to assess possible heterogeneous associations across populations. All populations were tested for HWE. Genotype and allele effects were analyzed using Chi-square tests. ORs and CIs were calculated from the combined results of both populations after adjustment for age, BMI, and menopause status. […]

Pipeline specifications

Software tools SPSS, PLINK
Applications Miscellaneous, GWAS
Diseases Breast Neoplasms, Neoplasms