Computational protocol: Determining Signalling Nodes for Apoptosis by a Genetic High-Throughput Screen

Similar protocols

Protocol publication

[…] The associated Ensembl gene IDs for the mouse cDNAs were identified by BLAST using blastx to search the Ensembl peptide database (NCBIM37.58). Using the identified Ensembl gene IDs the gene names, UniProt accessions, InterProScan motif/domain information and GO (The Gene Ontology Consortium ) biological process, molecular function and cellular location information were all extracted from the Ensembl Genes 58 Mus musculus genes (NCBIM37) dataset in BioMart . The PANTHER , molecular function and pathway information was obtained from the PANTHER web site (version 7.0) using the Ensembl gene IDs. […]

Pipeline specifications

Software tools BLASTX, InterProScan, BioMart
Application Genome annotation
Organisms Homo sapiens
Diseases Neoplasms, Neurodegenerative Diseases