Dataset features

Specifications


Application: RNA-seq analysis, sRNA-seq analysis
Number of samples: 4
Release date: Apr 28 2012
Last update date: Nov 27 2018
Access: Public
Diseases: Melanoma, Neoplasms, Skin Neoplasms
Dataset link Oncogenic BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration [HT-seq]

Experimental Protocol


Whole transcriptome RNA-seq followed assembly to Refseq/Gencode and de novo transcript assembly. RNA-seq performed on: 2 BRAFv600e melanomas, melanocytes+RFP control and melanocytes + BRAFv600e. We discovered protein-coding transcripts, annotated ncRNAs and novel transcripts (including lncRNAs) regulated by BRAFv600e also coordinately expressed in melanoma.

Repositories


GEO

GSE33092

ArrayExpress

E-GEOD-33092

ENA

SRP009029

BioProject

PRJNA149345

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Contact


Kun Qu