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Popular tool citations

chevron_left Sequence-based B-cell epitope prediction chevron_right
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ABCpred specifications

Information


Unique identifier OMICS_05737
Name ABCpred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Information


Unique identifier OMICS_05737
Name ABCpred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for ABCpred

ABCpred in publications

 (59)
PMCID: 5954444
PMID: 29780242
DOI: 10.1177/1177932218755337

[…] previously reported, was used to map epitopes of immunodominant b cells using bepipred software which is based on propensity scale methods (http://www.cbs.dtu.dk/services/bepipred/). furthermore, abcpred, based on learning methods of the machine, applies recurrent neural network (http://www.imtech.res.in/raghava/abcpred), and bcpreds, which are also based on the learning ability […]

PMCID: 5875910
PMID: 29561952
DOI: 10.1590/1414-431X20186213

[…] to derive both global (for the entire structure) and local (per residue) error estimates based on one single model. visualization of tertiary structure was performed using ucsf chimera 1.10.2 ()., abcpred (), bcpreds (), bcepred (), and bioinformatics predicted antigenic peptides (bpap) system () were used for predicting b cell epitopes of der f 33. abcpred predicted b cell epitopes in antigen […]

PMCID: 5767920
PMID: 29379262
DOI: 10.6026/97320630013417

[…] chosen based on a combined score. primarily selected epitopes were undertaken for further analysis. for note, these epitopes were nonamer in length., linear b-cell epitope prediction was done with abcpred v2.0 server, which uses artificial neural network []. this webserver is based on recurrent neural network (machine based technique) using fixed length patterns. the epitope length […]

PMCID: 5763123
PMID: 29445754
DOI: 10.1155/2017/2680160

[…] into feature vectors capturing selected properties, such as those given by different propensity scales. relevant examples of b-cell epitope prediction methods based on ml include bepipred [], abcpred [], lbtope [], bcpreds [], and svmtrip []. datasets, training features, and algorithms used for developing these methods differ. bepipred is based on random forests trained on b-cell epitopes […]

PMCID: 5915707
PMID: 29713601
DOI: 10.15171/bi.2018.06

[…] with the prediction of be and te. in order to improve the accuracy of computational epitope mapping, we used different online predictor servers, including ellipro lbtope, bepipred v1.0, bcepred, abcpred, and immune epitope database (iedb) server (window size 7, threshold 1.0).- the bepipred can predict potential epitopes based on a combination of a hidden markov model and a propensity […]


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ABCpred institution(s)
Institute of Microbial Technology, Chandigarh, India

ABCpred reviews

 (2)
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kuldeep's avatar image No country

kuldeep

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Desktop
I am unable to find that how can I use this tool to find out the epitopes in my query protein sequence. otherwise i would give it rating based on its performance.
Anonymous user #1106's avatar image No country

Anonymous user #1106

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This is heavily used software for predicting B-cell epitopes