ABCpred statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ABCpred
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Tool usage distribution map

This map represents all the scientific publications referring to ABCpred per scientific context
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Associated diseases

This word cloud represents ABCpred usage per disease context
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Popular tool citations

chevron_left Sequence-based B-cell epitope prediction chevron_right
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Protocols

ABCpred specifications

Information


Unique identifier OMICS_05737
Name ABCpred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Information


Unique identifier OMICS_05737
Name ABCpred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for ABCpred

ABCpred citations

 (71)
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Immune Informatic Analysis and Design of Peptide Vaccine From Multi epitopes Against Corynebacterium pseudotuberculosis

2018
Bioinform Biol Insights
PMCID: 5954444
PMID: 29780242
DOI: 10.1177/1177932218755337
call_split See protocol

[…] ile previously reported, was used to map epitopes of immunodominant B cells using BepiPred software which is based on propensity scale methods (http://www.cbs.dtu.dk/services/BepiPred/). Furthermore, ABCPred, based on learning methods of the machine, applies recurrent neural network (http://www.imtech.res.in/raghava/abcpred), and BCPreds, which are also based on the learning ability of the machine […]

call_split

Autoantibodies in Serum of Systemic Scleroderma Patients: Peptide Based Epitope Mapping Indicates Increased Binding to Cytoplasmic Domains of CXCR3

2018
Front Immunol
PMCID: 5874968
PMID: 29623076
DOI: 10.3389/fimmu.2018.00428
call_split See protocol

[…] tigenic (last visited 2/9/2018) with a window size of 6 amino acids. Antigenic is based on sliding window averaging antigenicity scores of amino acids in the sequence of proteins. The other software, ABCpred, available at http://crdd.osdd.net/raghava/abcpred/ABC_submission.html (last visited 2/10/2018), is based upon a trained neural network that determines a score for subsequences of protein sequ […]

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Homology modeling and epitope prediction of Der f 33

2018
Braz J Med Biol Res
PMCID: 5875910
PMID: 29561952
DOI: 10.1590/1414-431X20186213
call_split See protocol

[…] ABCpred (), BCPreds (), BcePred (), and Bioinformatics Predicted Antigenic Peptides (BPAP) system () were used for predicting B cell epitopes of Der f 33. ABCpred predicted B cell epitopes in antigen […]

library_books

Computer aided epitope design as a peptide vaccine component against Lassa virus

2017
Bioinformation
PMCID: 5767920
PMID: 29379262
DOI: 10.6026/97320630013417

[…] ABCpred server was used to predict sixteen-mer epitopes from the selected conserved sequences. This tool found 29 epitopes. The Bepipred linear epitope prediction tool was used to analyze conserved re […]

library_books

Fundamentals and Methods for T and B Cell Epitope Prediction

2017
J Immunol Res
PMCID: 5763123
PMID: 29445754
DOI: 10.1155/2017/2680160

[…] S was trained using various string kernels that eliminate the need for representing the sequence into length-fixed feature vectors, SMVtrip was trained on length-fixed tripeptide composition vectors. ABCpred and LBtope methods consist on artificial neural networks (ANNs) trained on similar positive data, B-cell epitopes, but differ on negative data, non-B-cell epitopes. Negative data used for trai […]

library_books

A novel B and helper T cell epitopes based prophylactic vaccine against Echinococcus granulosus

2017
PMCID: 5915707
PMID: 29713601
DOI: 10.15171/bi.2018.06

[…] rved with the prediction of BE and TE. In order to improve the accuracy of computational epitope mapping, we used different online predictor servers, including ElliPro LBTope, BepiPred v1.0, BcePred, ABCpred, and Immune Epitope Database (IEDB) server (window size 7, threshold 1.0).- The BepiPred can predict potential epitopes based on a combination of a hidden Markov model and a propensity scoring […]


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ABCpred institution(s)
Institute of Microbial Technology, Chandigarh, India

ABCpred reviews

 (2)
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kuldeep's avatar image No country

kuldeep

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Desktop
I am unable to find that how can I use this tool to find out the epitopes in my query protein sequence. otherwise i would give it rating based on its performance.
Anonymous user #1106's avatar image No country

Anonymous user #1106

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Desktop
This is heavily used software for predicting B-cell epitopes