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Protocols

abctools specifications

Information


Unique identifier OMICS_30203
Name abctools
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1.3
Stability Stable
Requirements
R(≥2.10), plyr, parallel, ggplot2, Hmisc, abind, abc, abc.data
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Matt Nunes

abctools citations

 (2)
call_split

Relaxed Observance of Traditional Marriage Rules Allows Social Connectivity without Loss of Genetic Diversity

2015
Mol Biol Evol
PMCID: 4540962
PMID: 25968961
DOI: 10.1093/molbev/msv102
call_split See protocol

[…] uous uniform distributions with πMBD∈[0,1], πmig∈[0,1], and N∈[5,000,12,000]. From 1×105 simulations, 0.1% were accepted using a rejection algorithm (). ABC was performed using the R packages abc and abctools (; ).Different sets of summary statistics were explored and the optimal set selected that returned the lowest prediction error (a measure of distance between estimated and true values for eac […]

library_books

Selecting Summary Statistics in Approximate Bayesian Computation for Calibrating Stochastic Models

2013
Biomed Res Int
PMCID: 3830866
PMID: 24288668
DOI: 10.1155/2013/210646

[…] of the parameter vector θ = {c 1, c 3, τ} presented to the ABC algorithm. The statistical programming language R is among the good choices for ABC implementation; here we use the abc function in the abctools package for R []. The abc function also requires the user to decide whether to work with transformed parameter values and to select a method to improve estimation of the partial posterior by […]


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