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ABIDE specifications

Information


Unique identifier OMICS_13817
Name ABIDE
Alternative name Autism Brain Imaging Data Exchange
Restrictions to use None
Community driven No
Data access File download
User data submission Not allowed
Maintained Yes

Documentation


Maintainer


  • person_outline Adriana Di Martino

Publication for Autism Brain Imaging Data Exchange

ABIDE citations

 (8)
library_books

Both Hypo Connectivity and Hyper Connectivity of the Insular Subregions Associated With Severity in Children With Autism Spectrum Disorders

2018
Front Neurosci
PMCID: 5904282
PMID: 29695950
DOI: 10.3389/fnins.2018.00234

[…] We used the dataset of the University of California, Los Angeles, one of the subsamples in the Autism Brain Imaging Data Exchange database (http://preprocessed-connectomes-project.org/abide/download.html). In regards to inclusion criteria, ASD had a prior clinical diagnosis of autism based on c […]

library_books

Functional Brain Imaging Synthesis Based on Image Decomposition and Kernel Modeling: Application to Neurodegenerative Diseases

2017
Front Neuroinform
PMCID: 5694626
PMID: 29184492
DOI: 10.3389/fninf.2017.00065

[…] prediction challenge from Magnetic Resonance Imaging (MRI) at Kaggle (Sarica et al., ). Multi-center initiatives, such as the Alzheimer's Disease Neuroimaging Initiative (ADNI) (Weiner et al., ), the Autism Brain Imaging Data Exchange (ABIDE) (Di Martino et al., ) or the Parkinson's Progressions Markers Initiative (PPMI) (Marek et al., ) provide large image samples that reduce the type I error and […]

library_books

Investigating Brain Connectomic Alterations in Autism Using the Reproducibility of Independent Components Derived from Resting State Functional MRI Data

2017
Front Neurosci
PMCID: 5596295
PMID: 28943835
DOI: 10.3389/fnins.2017.00459

[…] nd averaging independent component analysis by reproducibility—RAICAR (Yang et al., ) and has been successfully used in a number of applications (Yang et al., ,). In this work, gRAICAR was applied to Autism Brain Imaging Data Exchange (ABIDE) data (Di Martino et al., ) to estimate the independent components which are most reproducible, in Autism and Control groups, respectively, but not reproducib […]

library_books

The impact of T1 versus EPI spatial normalization templates for fMRI data analyses

2017
Hum Brain Mapp
PMCID: 5565844
PMID: 28745021
DOI: 10.1002/hbm.23737

[…] y on the template‐based nonlinear spatial normalization within the SPM12 pipeline, but results are expected to apply to any T1norm approach. For comparison, we also include preprocessed data from the Autism Brain Imaging Data Exchange (ABIDE [Craddock, ; Martino et al., ]) which differed in the way that EPI and T1 data were aligned and in the way that T1 data were transformed to standard space (ht […]

library_books

Disruption to control network function correlates with altered dynamic connectivity in the wider autism spectrum

2017
PMCID: 5473646
PMID: 28652966
DOI: 10.1016/j.nicl.2017.05.024

[…] The base data for this study is the collection of MRI scans assembled by the Autism Brain Imaging Data Exchange (ABIDE) consortium from 16 different study sites (). Resting state and MPRAGE structural data for 1112 subjects (539 with ASD and 573 neurotypical controls) are made […]

library_books

2015 Brainhack Proceedings

2016
GigaScience
PMCID: 5103253
DOI: 10.1186/s13742-016-0147-0

[…] like to thank the organizers and attendees of Brainhack MX. References 1. Di Martino A, Yan CG, Li Q, Denio E, Castellanos FX, Alaerts K, Anderson JS, Assaf M, Bookheimer SY, Dapretto M, others. The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism. Molecular psychiatry. 2014; 19: 659–667.2. Craddock RC, Benhajali Y, Chu C, Chouinar […]

Citations

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ABIDE institution(s)
Phyllis Green and Randolph Cowen Institute for Pediatric Neuroscience at the NYU Child Study Center, New York University Langone Medical Center, New York, NY, USA; Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA; Center for the Developing Brain, Child Mind Institute, New York, NY, USA; KU Leuven, Leuven, Belgium; Division of Neuroradiology, University of Utah, Salt Lake City, UT, USA; Interdepartmental Program in Neuroscience, University of Utah, Salt Lake City, UT, USA; The Brain Institute at the University of Utah, Salt Lake City, UT, USA; Department of Bioengineering, University of Utah, Salt Lake City, UT, USA; Olin Neuropsychiatry Research Center, Institute of Living at Hartford Hospital, Hartford, CT, USA; Yale School of Medicine, New Haven, CT, USA; Center for Cognitive Neuroscience, UCLA, Los Angeles, CA, USA; Department of Psychiatry & Biobehavioral Sciences, Semel Institute for Neuroscience and Human Behavior, UCLA, Los Angeles, CA, USA; Interdepartmental Neuroscience Program, UCLA, Los Angeles, CA, USA; David Geffen School of Medicine, UCLA, Los Angeles, CA, USA; Ahmanson-Lovelace Brain Mapping Center, UCLA, Los Angeles, CA, USA; Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Psychiatry and Trinity College Institute of Neuroscience, Trinity College Dublin, Dublin, Ireland; Department of Psychology, Carnegie Mellon University, Pittsburgh, PA, USA; Psychology, Ben Gurion University of the Negev, Beersheba, Israel; Institute for Clinical Radiology, Ludwig Maximilians University Munich, Munich, Germany; Oregon Health & Science University, Portland, OR, USA; Division of Humanities and Social Sciences, Caltech, Pasadena, CA, USA; Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, USA; San Diego State University, San Diego, CA, USA; Netherlands Institute for Neuroscience, Royal Dutch Academy of Science (KNAW), Amsterdam, NL; BCN NeuroImaging Center, University Medical Center Groningen, Rijksuniversiteit Groningen, Groningen, NL; Waisman Laboratory for Brain Imaging and Behavior, University of Wisconsin, Madison, WI, USA; Department of Psychiatry, Division of Child & Adolescent Psychiatry, University of Wisconsin, Madison, WI, USA; Weill-Cornell Medical College, New York, NY, USA; University of Pittsburgh School of Medicine, Pittsburgh, PA, USA 31Stanford University, Stanford, CA, USA; Department of Neurology, University of Pittsburgh, Pittsburgh, PA, USA; University of Michigan, Ann Arbor, MI, USA; Laboratory for Neurocognitive and Imaging Research, Kennedy Krieger Institute, Baltimore, MD, USA; Translational MRI, University of Leuven (KU Leuven), Leuven, Belgium; Division of Biology, Caltech, Pasadena, CA, USA; Departments of Neurology and Psychiatry, Johns Hopkins School of Medicine, Baltimore, MD, USA
ABIDE funding source(s)
This work was supported by the National Institute of Mental Health (grants n°K23MH087770, R03MH096321 and BRAINSRO1MH094639-01), the Leon Levy Foundation, the Stavros Niarchos Foundation, the National Institute of Health (grants n°DC011095, MH084164, K01MH092288-Stanford; HD55748, KO1MH081191, MH67924-Pitt; K08MH092697, P50MH60450, R01NS34783, R01MH080826, T32DC008553-USM; K23MH087770, R01HD065282, R01MH081218, R21MH084126-NYU; MH066496, R21MH079871, U19HD035482-UM1&UM2; R00MH091238, R01MH086654, R01MH096773-OHSU; R01MH081023-SDSU; 1R01HD06528001-UCLA1&UCLA2; K01MH071284-Yale and R01MH080721-Caltech), the Simons Foundation (OHSU, Yale, Caltech, CMU), the Belgian Interuniversity Attraction Poles (grant n°P6/29;Leuven1&2), the Ben B. and Iris M. Margolis Foundation (USM), the European Commission, the Marie Curie Excellence (grant n°MEXT-CT-2005-023253; SBL), the Flanders Fund for Scientific Research (grants n°1841313N, G. 0354.06, G.0758.10; and Leuven1&2), the Hartford Hospital (Olin), the John Merck Scholars Fund (Yale), the Kyulan Family Foundation (Trinity), the Michigan Institute for Clinical and Health Research, the National Children’s Hospital (AMNCH; Trinity), the National Initiative for Brain and Cognition NIHC HCMI (grant n°056-13-014, 056-13-017; SBL), the WO (grant n° 051.07.003, 452-04-305, 400-08-089; SBL), the Netherlands Brain Foundation (grant n°KS 2010(1)-29; SBL), the NRSA Pre-doctoral Fellowship (grant n°F31DC010143; USM), the Research Council of the University of Leuven (Leuven1&2), the Stanford Institute for Neuro-Innovations & Translational Neurosciences (Stanford), the Leon Levy Foundation (NYU), the Meath Foundation, the Adelaide and Meath Hospital (Trinity), the Stavros Niarchos Foundation (NYU), the UCLA Autism Center of Excellence (UCLA1&2) and the University of Utah Multidisciplinary Research Seed Grant (USM).

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