ABruijn assembler statistics

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ABruijn assembler specifications


Unique identifier OMICS_11499
Name ABruijn assembler
Alternative name Flye
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA
Biological technology Pacific Biosciences, Oxford Nanopore
Operating system Unix/Linux
Programming languages C, C++, Javascript, Python
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 2.3.1
Stability Beta
Blasr aligner
Maintained Yes


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  • person_outline Mikhail Kolmogorov <>

Publications for ABruijn assembler

ABruijn assembler in publication

PMCID: 5466710
PMID: 28369459
DOI: 10.1093/gigascience/giw018

[…] moreover, the detection accuracy is highly dependent on the completeness of the assembly, because, if translocation breakpoints are located on contigs boundaries, they will not be detectable., the abruijn assembler allowed the construction of a single contig corresponding to the mt genome for each isolate. to assess the quality of the assemblies, we aligned the polished s288c mt contig […]

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ABruijn assembler institution(s)
Department of Computer Science and Engineering, University of California, San Diego, CA, USA; Graduate Program in Bioinformatics and Systems Biology, University of California, San Diego, CA, USA; Research School of Computer Science, Australian National University, Canberra, ACT, Australia

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